PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG753500.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 146aa    MW: 16281.1 Da    PI: 7.6039
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG753500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.13.4e-4531122495
                NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                          +d++lPianv+rimk vlP +akisk+aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre 
  Pavir.5KG753500.2.p  31 HDNLLPIANVGRIMKDVLPPQAKISKHAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYANAMRRYLQRYRES 120
                          699**************************************************************************************8 PP

                NF-YB  94 eg 95 
                          e+
  Pavir.5KG753500.2.p 121 EE 122
                          85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-4130122IPR009072Histone-fold
SuperFamilySSF471132.02E-3332134IPR009072Histone-fold
PfamPF008082.6E-243598IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.9E-146280No hitNo description
PRINTSPR006153.9E-148199No hitNo description
PRINTSPR006153.9E-14100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSENFDFTGF AQQGQPQPQN LSRDDNSRAG HDNLLPIANV GRIMKDVLPP QAKISKHAKE  60
TIQECATEFI GFVTGEASER CRRERRKTIN GDDICHAMRS LGLDHYANAM RRYLQRYRES  120
EELAAALNSG GGGIQIDNHQ RSSHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-3731119492Transcription factor HapC (Eurofung)
4g92_B2e-3731119492Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9742441e-96JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972332.13e-77PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040275e-43NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLH9B3R62e-75H9B3R6_MAIZE; CCAAT-HAP3 transcription factor
STRINGGRMZM2G169884_P015e-75(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-44nuclear factor Y, subunit B4